/******************************************************************************
	This file is a part of the Snapshot Bioinformatics Project

	Copyright (C) 2012-2013 Jarom Schow

	This program is free software: you can redistribute it and/or modify
	it under the terms of the GNU General Public License as published by
	the Free Software Foundation, either version 3 of the License, or
	(at your option) any later version.

	This program is distributed in the hope that it will be useful,
	but WITHOUT ANY WARRANTY; without even the implied warranty of
	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
	GNU General Public License for more details.

	You should have received a copy of the GNU General Public License
	along with this program.  If not, see <http://www.gnu.org/licenses/>.
******************************************************************************/
#ifndef B_STRINGS_H
#define B_STRINGS_H

#include "BioDefs.h"

#include <QtCore/QString>

///////////////////////////////////////////////////////////////////////////////
// BioSQL string constants:
///////////////////////////////////////////////////////////////////////////////

// Table names:
const QString	c_tableBioentry =					"bioentry";
const QString	c_tableBioentryDbXRef =				"bioentry_dbxref";
const QString	c_tableBioentryPath =				"bioentry_path";
const QString	c_tableBioentryQualifierValue =		"bioentry_qualifier_value";
const QString	c_tableBioentryReference =			"bioentry_reference";
const QString	c_tableBioentryRelationship =		"bioentry_relationship";
const QString	c_tableBiosequence =				"biosequence";
const QString	c_tableComment =					"comment";
const QString	c_tableDbXRef =						"dbxref";
const QString	c_tableDbXRefQualifierValue =		"dbxref_qualifier_value";
const QString	c_tableLocation =					"location";
const QString	c_tableLocationQualifierValue =		"location_qualifier_value";
const QString	c_tableOntology =					"ontology";
const QString	c_tableReference =					"reference";
const QString	c_tableSeqFeature =					"seqfeature";
const QString	c_tableSeqFeatureDbXRef =			"seqfeature_dbxref";
const QString	c_tableSeqFeaturePath =				"seqfeature_path";
const QString	c_tableSeqFeatureQualifierValue =	"seqfeature_qualifier_value";
const QString	c_tableSeqFeatureRelationship =		"seqfeature_relationship";
const QString	c_tableTerm =						"term";
const QString	c_tableTermDbXRef =					"term_dbxref";
const QString	c_tableTermPath =					"term_path";
const QString	c_tableTermRelationship =			"term_relationship";
const QString	c_tableTermRelationshipTerm =		"term_relationship_term";
const QString	c_tableTermSynonym =				"term_synonym";

// Ontology names:
const QString	c_ontAnnotationTags =		"Annotation Tags";
const QString	c_ontSeqFeatureKeys =		"SeqFeature Keys";
const QString	c_ontSeqFeatureSources =	"SeqFeature Sources";

// Terms:
const QString	c_termDateChanged =	"date_changed";
const QString	c_termEMBL =		"EMBL/GenBank/SwissProt";

// Annotation names:
const QString	c_annGenBankId =		"gi";
const QString	c_annDataFileDivision =	"data_file_division";
const QString	c_annSequenceVersion =	"sequence_version";
const QString	c_annOrganism =			"organism";
const QString	c_annSource =			"source";
const QString	c_annTaxonomy =			"taxonomy";

// Qualifier names:
const QString	c_qualDbXRef =	"db_xref";

// Alphabet string constants:
const QString	c_alphaDNA =		"dna";
const QString	c_alphaRNA =		"rna";
const QString	c_alphaProtein =	"protein";
const QString	c_alphaUnknown =	"unknown";

#endif // B_STRINGS_H